TaxonomyApiServiceImpl.java

/*
 * Copyright 2025 Global Crop Diversity Trust
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *   http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.genesys.server.api.v2.facade.impl;

import org.genesys.server.api.v2.facade.TaxonomyApiService;
import org.genesys.server.api.v2.mapper.MapstructMapper;
import org.genesys.server.api.v2.model.genesys.Taxonomy2DTO;
import org.genesys.server.api.v2.model.grin.TaxonomySpeciesDTO;
import org.genesys.server.exception.SearchException;
import org.genesys.server.service.TaxonomyService;
import org.genesys.server.service.filter.TaxonomyExtraFilter;
import org.genesys.server.service.filter.TaxonomyFilter;
import org.genesys.server.service.filter.TaxonomySpeciesFilter;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.Pageable;
import org.springframework.stereotype.Service;
import org.springframework.transaction.annotation.Transactional;

import java.util.List;

@Service
@Transactional(readOnly = true)
public class TaxonomyApiServiceImpl implements TaxonomyApiService {

	@Autowired
	private MapstructMapper mapper;

	@Autowired
	private TaxonomyService service;

	@Override
	public Taxonomy2DTO get(Long id) {
		return mapper.map(service.get(id));
	}

	@Override
	public List<Taxonomy2DTO> list(TaxonomyFilter taxonomyFilter) {
		return mapper.map(service.list(taxonomyFilter), mapper::map);
	}

	@Override
	public Page<Taxonomy2InfoDTO> list(TaxonomyExtraFilter filter, Pageable page) {
		return mapper.map(service.list(filter, page), t2Info -> Taxonomy2InfoDTO.from(mapper.map(t2Info.taxonomy), t2Info.accessionCount));
	}

	@Override
	public Page<TaxonomySpeciesDTO> listSpecies(TaxonomySpeciesFilter filter, Pageable page) throws SearchException {
		return mapper.map(service.listSpecies(filter, page), mapper::map);
	}

	@Override
	@Transactional
	public Taxonomy2DTO setGrinSpecies(long taxonomy2Id, Long customGrinSpeciesId) {
		return mapper.map(service.setGrinSpecies(taxonomy2Id, customGrinSpeciesId));
	}
}